CUNY  > CSI  >  Biology  >  Shen Lab

 

Publications

 

REFEREED PUBLICATIONS

 

Andrew Hong, Aiying Zhang, Yang Ke, Abdeslem El Idrissi and Chang-Hui Shen. (2011) Downregulation of GABAA b subunits is transcriptionally controlled by Fmr1p. J. Mol. Neurosci. (in press; PMID:21547530)

 

Roshini N. Wimalarathna, Chen-Han Tsai and Chang-Hui Shen. (2011) Comparative transcriptional analysis of genes involved in yeast phospholipid biosynthesis. J. Microbiol. 49, 265-273.

 

Michelle Esposito, Paulina Konarzewska, Oluwafemi Odeyale, and Chang-Hui Shen (2010) Activator-dependent recruitment of histone acetylation at the yeast INO1 promoter. Biochem Biophys Res Commun 391, 1285-1290.

 

Aiying Zhang, Chang-Hui Shen, Shuang Yong Ma, Yang Ke, and Abdeslem El Idrissi (2009) Altered expression of Autism-associated genes in the brain of Fragile X mouse model. Biochem Biophys Res Commun 379, 920-923.

 

Jason Ford, Oluwafemi Odeyale, and Chang-Hui Shen (2008) Activator-dependent recruitment of SWI/SNF and INO80 during INO1 activation. Biochem Biophys Res Commun. 373, 602-626.

 

Jason Ford, Oluwafemi Odeyale, Antonious Eskandar, Nafila Kouba, and Chang-Hui Shen (2007) A SWI/SNF- and INO80-dependent nucleosome movement at the INO1 promoter. Biochem Biophys Res Commun 361, 974-979.

 

David Clark and Chang-Hui Shen. (2006) Mapping histone modifications by nucleosome immunoprecipitation. Methods in Enzymology, 410, 416-430.

 

Geetu Mendiratta ,  Peter R. Eriksson ,  Chang-Hui Shen and David Clark. (2006) The DNA-binding domain of the yeast Spt10 activator includes a zinc finger that is homologous to foamy virus integrase. J. Biol. Chem. 281, 7040-7048.

 

Peter R. Eriksson, Geetu Mendiratta, Neil McLaughlin, Tyra Wolfsberg, Leopoldo Maríño-Ramirez, Tiffany Pompa, Mohendra Jainerin, David Landsman, Chang-Hui Shen and David J. Clark (2005) The putative histone acetyltransferase encoded by the yeast SPT10 gene binds specifically to upstream activating sequences in the major core histone promoters Mol. Cell. Biol. 25, 9127-9137.

 

Yeonjung Kim, Chang-Hui Shen and David Clark.(2004) Purification and Nucleosome Mapping Analysis of Native Yeast Plasmid Chromatin.  Methods. 33, 59-67.

 

Chang-Hui Shen, Benoit P. Leblanc, Carolyn Neal, Ramin Akhaven and David J. Clark. (2002). Targeted histone acetylation at the yeast CUP 1 promoter requires the transcriptional activator, the TATA boxes, and the putative histone acetylase encoded by SPT10.  Mol. Cell. Biol. 22, 6406-6416.

 

Chang-Hui Shen, Benoit Leblanc, Jennifer Alfieri and David Clark. (2001)  Remodeling of the yeast CUP 1 chromatin involves activator-dependent re-positioning of nucleosomes over the entire gene and flanking sequences. Mol. Cell. Biol. 21: 534-547.

 

Chang-Hui Shen and David Clark, (2001)  DNA sequence plays a major role in determining nucleosome positions in yeast chromatin. J. Biol. Chem. 276:35209-3516.                    

 

 

BOOK

Chang-Hui Shen (2011) Histones: Class, Structure and Function, Nova Science Publisher, Inc. NY.

 

 

BOOK CHAPTERS

Chang-Hui Shen (2011) Linker histones and chromatin structure. In: Chang-Hui Shen. Histones: Class, Structure and Function, Nova Science Publisher, Inc. NY. (in press)

 

Roshini Wimalarathna and Chang-Hui Shen (2011) Histone modifications and gene expression. In: Chang-Hui Shen. Histones: Class, Structure and Function, Nova Science Publisher, Inc. NY. (in press)

 

 

CONFERENCE ABSTRACTS

 

Eugene Lempert and Chang-Hui Shen. Cloning of the critical domains of Ino2p responsible for recruiting chromatin remodeling activities. CSI undergraduate conference, NY, 2011.

 

Roshini Wimalarathna, Po Yun Pan and Chang-Hui Shen. Transcriptional regulation of yeast CUP1 gene. Biochem. Cell Biol. (in press) (abstract)

 

Roshini Wimalarathna, Po Yun Pan and Chang-Hui Shen. Transcriptional regulation of yeast CUP1 gene. 32nd International conference – Asilomar Chromatin and Chromosome Conference. CA, 2010.

 

Michele Esposito, Paulina Konarzewska, and Chang-Hui Shen. Histone acetylation at the yeast INO1 promoter requires the transcriptional activator and both Gcn5p and Esa1p histone acetylase. CSI undergraduate conference, NY, 2009.

 

Jason Ford and Chang-Hui Shen. SWI/SNF and INO80 Contribute to Local Nucleosome Mobilization at the INO1 Promoter. CSI undergraduate conference, NY, 2008.

 

Chang-Hui Shen, Jason Ford and Oluwafemi Odeyale. The role of romatin remodeling activities in INO1 activation. Symposium on biological complexity: diseases of transcription. Salk Institute, San Diego, CA. 2007.

 

Tiffany Pompa, Jonathan Blaize, William L’Amoreaux and Chang-Hui Shen. Correlation between Methylation and Acetylation within the Cell due to Environmental Factors. Microscopy and Microanalysis 2006 Meeting. Chicago.

 

Tiffany Pompa, Jonathan Blaize, William L’Amoreaux and Chang-Hui Shen. Co-localization of the putative histone acetylase Spt10p and chemically modified histone H3.   Microscopy and Microanalysis 2005 Meeting. Honolulu, Hawaii.

 

Oluwafemi Odeyale and Chang-Hui Shen.  The interplay between histone modifying enzyme and chromatin remodeling complex in INO1 activation. New York City

Louis Strokes Alliance for Minority Participation Conference, Steven’s Institute of Technology in New Jersey, 2005.

 

Oluwafemi Odeyale and Chang-Hui Shen.  The role of chromatin remodeling complex in yeast INO1 gene expression. National conference & research symposium, 2005, Stony Brook, awarded First Place for poster in the biological sciences.

 

Oluwafemi Odeyale and Chang-Hui Shen.  The role of chromatin remodeling complex in yeast INO1 gene expression. Annual Biomedical Research Conference for Minority Students, Dallas, TX, 2004, pp.280.

 

Oluwafemi Odeyale and Chang-Hui Shen.  The role of chromatin remodeling complex in yeast INO1 gene expression. New York City Louis Strokes Alliance for Minority Participation Conference, Brookhaven National Laboratory, 2004.

 

Antonious Eskandar, Nafila Kouba, Oluwafemi Odeyale, Baishali Kanjilal and Chang-Hui Shen. In Vivo Chromatin Remodeling by Yeast Ino80p. The 69th Cold Spring Harbor Symposium on Quantitative Biology.  Cold Spring Harbor, NY. 2004, pp.58.

 

Chang-Hui Shen and David Clark. Histone Hyperacetylation at the CUPI Promoter Requires the Transcriptional Activator and the TATA Boxes.  Keystone Symposia - Mechanisms of Eukaryotic Transcriptional Regulation, Santa Fe, NM 2001, pp. 90.

 

Chang-Hui Shen, Benoit Leblanc, Jennifer Alfieri and David Clark.  Chromatin Structure of a Transcriptionally Active Metallothionein Gene Purified from yeast Cells, Keystone Symposia - Chromatin Structure and Function. Durango, CO, 2000, pp.72.

 

Chang-Hui Shen and James Allan.  Expression of the Chicken Linker Histone Globular Domain in E. coli is Post-Transcriptionally Regulated.  The Biochemical Society Predoctoral Meeting, Glasgow Caledonian University, Glasgow, UK, 1996.  Biometra Prize for the Best Poster.